scallops.experiment.elements.Experiment

class scallops.experiment.elements.Experiment(images=None, labels=None)

Spatial experiment containing images and labels.

Maps keys (e.g. A01-102) to images and labels.

Parameters:

  • images (Mapping[str, DataArray])

  • labels (Mapping[str, ndarray | DataArray])

__init__(images=None, labels=None)

Create an experiment.

Parameters:

  • images (Mapping[str, DataArray]) – Maps image key to image.

  • labels (Mapping[str, ndarray | DataArray]) – Maps label key to label.

Methods

save(store)

Save this experiment in Zarr format.

Attributes

images

The image dictionary.

labels

The labels dictionary.
property images: Mapping[str, DataArray]

The image dictionary.

property labels: Mapping[str, ndarray | DataArray]

The labels dictionary.

save(store)

Save this experiment in Zarr format.

Parameters:

store (BaseStore | MutableMapping) – Either a Zarr store or a string.