scallops.features.agg.agg_features

scallops.features.agg.agg_features(data, by, weights_col=None, agg_func='mean')

Aggregate features

Parameters:

• data (AnnData) – Annotated data matrix.

• by (str | Sequence[str]) – Perturbation column(s) in data.obs to aggregate by.

• weights_col (str | None) – If provided, perform weighted aggregation

• agg_func (Literal['mean', 'median']) – Aggregation method.

Returns:

Aggregated data