scallops.segmentation.util.threshold_quantile
- scallops.segmentation.util.threshold_quantile(image, quantile)
Compute threshold using specified quantile after subtraction of the minimum per channel.
- Parameters:
image (DataArray) – Image with the dimensions (t,c,z,y,x)
quantile (float) – Quantile (between 0 and 1 inclusive)
- Returns:
Tuple of image with minimum subtracted and computed threshold
- Return type:
tuple[DataArray, ndarray]