scallops.spots.peak_thresholds_from_reads

scallops.spots.peak_thresholds_from_reads(df_reads, Q_cutoff=60)

Calculate recall, precision, f1, and accuracy for different cutoff value of peaks.

Parameters:

• df_reads (DataFrame) – Data frame containing reads.

• Q_cutoff (float) – Threshold for binarization of reads.

Returns:

Result data frame.

Return type:

DataFrame