scallops.visualize.napari.add_bases

scallops.visualize.napari.add_bases(viewer, df_reads, y_slice=None, x_slice=None, base_colors={'A': 'red', 'C': 'green', 'G': 'yellow', 'T': 'magenta'}, **params)

Add bases to napari viewer.

Parameters:

• viewer (napari.Viewer) – The napari viewer

• df_reads (DataFrame | DataFrame) – Dataframe containing reads

• y_slice (slice | None) – Slice over y axis

• x_slice (slice | None) – Slice over x axis

• base_colors (dict[str, str]) – Dictionary of colors to use for bases

• params – Dictionary of parameters to pass to napari viewer add_points

Returns:

The newly created napari points layer

Return type:

napari.layers.Points