scallops.spots.normalize_base_intensities

scallops.spots.normalize_base_intensities(image, qmin=0.01, qmax=0.98, eps=1e-20, dtype=<class 'numpy.float32'>)

Normalize base intensities for every time and channel separately.

Parameters:

• image (ndarray | Array) – Array with dimensions (t,c,y,x)

• qmin (float | None) – Minimum quantile for normalization.

• qmax (float | None) – Maximum quantile for normalization.

• eps (float) – Small value added to the denominator for normalization.

• dtype (dtype) – Data type of the output image.

Returns:

Normalized base intensities

Return type:

Array | ndarray